About Java MIAPE API

Updates and new features: here (last update:24th-November-2011)

Getting Java MIAPE API: here

Java MIAPE API documentation: here

Link to Javadoc:  here

About MIAPE

MIAPE Extractor Tool

The MIAPE extractor tool is a standalone tool that allows:

  • to automatically create MIAPE compliant reports from your standard data files (PRIDE XML, mzML, mzIdentML) and others (XTandem output xml), storing these reports in the ProteoRed MIAPE repository
  • to export your MIAPE-compliant reports to standard data files (currently to PRIDE XML).
  • NEW: to obtain graphical representations of qualitative information from MIAPE MSI documents.

Link to download latest version  latest version

Screeshots here

Quick tutorial:  here

MIAPE API Webservices

This webservice provides the basic functionality to interact remotely with the MIAPE repository.
It allows retrieving, storing and deleting MIAPE documents and projects.
Authentication of the user is always performed previous to any action, so privacy is preserved in the API.

Link to WSDL file:  MiapeAPIWebservice.wsdl

List of functions provided by the webservice here.

Webservice documentation and examples here.

MIAPE Extractor Webservices

This webservice provides a set of functions related to the extraction of MIAPE information from standard XML files and related to the creation of standard XML files from MIAPE documents in the MIAPE repository.
At the moment the standard XML files that supports are:  mzML,  mzIdentML,  PRIDE XML and  XTandem output XML.
Authentication of the user is always performed previous to any action, so privacy is preserved in the API.

Link to WSDL file:  MiapeExtractor.wsdl

List of functions provided by the service here.

Webservice documentation and examples here.

Team

The Bionformatics group members are:

  • Salvador Martínez-Bartolomé (smartinez at proteored.org) [Publications]
  • Miguel Angel López García (malgarcia at proteored.org) [Publications]
  • Alberto Medina Auñón (jamedina at proteord.org) [Publications]


Group Coordinator:

  • J. Pablo Albar Ramirez (jpalbar at proteord.org) [Publications]


Group publications: here

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